CytoWave: Perturbation-Centric Pretraining for Single-Cell Response Prediction
Yuwei Miao*, Jingquan Yan*, Hehuan Ma, Thao M. Dang, Lin Xu, Siyuan Zhang, and Junzhou Huang.
Publications
B2P-Corr: Batch-to-Population Gradient Estimators for Non-Decomposable Correlation Losses
Jingquan Yan*, Yuwei Miao*, Peiran Yu, and Junzhou Huang.
Held-Out-Gene Yeast Knockout Fitness Prediction with Gene-Level Biological Features
Zheng Zheng, Yuwei Miao, Xiao Hu, Hehuan Ma, Yuzhi Guo, Siyuan Zhang, Lin Xu, and Junzhou Huang.
GAMI: Gradient-Aligned Modality Importance for Multimodal Cancer Outcome Prediction
Xiao Hu, Yuzhi Guo, Zheng Zheng, Wenliang Zhong, Haiqing Li, Yuwei Miao, Jingquan Yan, Hehuan Ma, Yinhao Wu, and Junzhou Huang.
Breaking the Correlation Plateau: On the Optimization and Capacity Limits of Attention-Based Regressors
Jingquan Yan*, Yuwei Miao*, Peiran Yu, and Junzhou Huang.
Deep Learning for Toxicity Prediction
Yuwei Miao and Junzhou Huang.
GenePheno: Interpretable Gene Knockout-Induced Phenotype Abnormality Prediction from Gene Sequences
Jingquan Yan*, Yuwei Miao*, Lei Yu, Yuzhi Guo, Xue Xiao, Lin Xu, and Junzhou Huang.
Heterogeneous Aligned Fusion for Survival Prediction with Missing Modalities
Zheng Zheng, Yuzhi Guo, Xiao Hu, Yuwei Miao, Hehuan Ma, Jean Gao, and Junzhou Huang.
HAGE: Hierarchical Alignment Gene-Enhanced Pathology Representation Learning with Spatial Transcriptomics
Thao M. Dang, Haiqing Li, Yuzhi Guo, Hehuan Ma, Feng Jiang, Yuwei Miao, Qifeng Zhou, Jean Gao, and Junzhou Huang.
GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction
Yuwei Miao, Yuzhi Guo, Hehuan Ma, Jingquan Yan, Feng Jiang, Rui Liao, and Junzhou Huang.
UniEntrezDB: Large-scale Gene Ontology Annotation Dataset and Evaluation Benchmarks with Unified Entrez Gene Identifiers
Yuwei Miao, Yuzhi Guo, Hehuan Ma, Jingquan Yan, Feng Jiang, Weizhi An, Jean Gao, and Junzhou Huang.
Recent Advances in Toxicity Prediction: Applications of Deep Graph Learning
Yuwei Miao, Hehuan Ma, and Junzhou Huang.
Improve Generalization Ability of CNN by Data Augmentation and SE Block in Landmark Classification
Yuwei Miao and Wenyi Luo.